GSM1904950: E110019_DMEM_0.5_BR2_2; Escherichia coli E110019; RNA-Seq - SRA

SRX1322488: GSM1904950: E110019_DMEM_0.5_BR2_2; Escherichia coli E110019; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 32.9M spots, 6.6G bases, 4.2Gb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Comparative transcriptomics of the virulence regulons of enteropathogenic Escherichia coli from diverse phylogenomic lineages

PRJNA298339 • SRP064662 • All experiments • All runs

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Global transcriptional analysis of eleven EPEC strains, including the most frequently studied strains used in laboratory studies investigating EPEC virulence mechanisms. Overall design: RNA sequencing was performed on the four EPEC prototype strains during growth in laboratory media and conditions that have been previously demonstrated to induce expression of EPEC virulence factors.

Sample: E110019_DMEM_0.5_BR2_2

SAMN04158453 • SRS1109925 • All experiments • All runs

Organism: Escherichia coli E110019

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: RNA was isolated from cells grown in LB or DMEM using the Ribopure Bacteria kit (Ambion) and contaminating DNA was removed using the Ribopure Dnase I and also the Turbo DNA-free kit (Ambion). RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM1904950

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 32.9M spots, 6.6G bases, 4.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR2601736	32,869,468	6.6G	4.2Gb	2017-05-10

ID:: 1887165

SRA

Sequence Read Archive

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